Bacteriome.org - Bacterial protein interaction database Tool name | Bacteriome.org - Bacterial protein interaction database |
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URL | http://www.bacteriome.org |
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Important features | A web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships. |
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Citations | Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847. |
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Year of publication | 2007 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | Predicted PPIs based on gene expression, Predicted PPIs based on co-expression, Predicted PPIs based on genomic data, Predicted PPIs based on gene ontology (GO), Predicted PPIs based on gene fusion, PPIs with their functional associations, PPIs along with supporting evidences, PPIs along with their evolutionary relationships, PPIs along with the complexes involved, PPIs specific to microbes, PPIs along with their structural relationships, PPIs for given protein sequence (BLAST search), Protein-domain/ domain-domain interactions |
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Category | http://www.bacteriome.org, A web-resource that provides domain interactions along with PPIs. Provides protein interactions along with the complexes involved. Protein interactions specific to a biological process (e.g., apoptosis, cell cycle) can also be obtained. Provides interactions along with their structural relationships., Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Bacteriome.org--an integrated protein interaction database for E. coli. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16. PubMed PMID: 17942431; PubMed Central PMCID: PMC2238847., 2007, 100 |
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Online/downloadable | |
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Online | Online |
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Downloadable | |
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Registration required | |
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Free | Free |
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Paid | |
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Working status | Functional |
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Function | Predicted PPIs based on co-localization |
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Category | |
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Tool_frequency | |
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